From owner-chemistry@ccl.net Mon Dec 20 16:51:01 2010 From: "Joe Corkery jcorkery#eyesopen.com" To: CCL Subject: CCL: OpenEye CUP XII - Agenda and Registration Details Message-Id: <-43424-101220153449-24696-aUHecUVBCKmAcWPfI1SXkg^-^server.ccl.net> X-Original-From: Joe Corkery Content-Language: en-US Content-Type: multipart/alternative; boundary="_000_C935280FAC38jcorkeryeyesopencom_" Date: Mon, 20 Dec 2010 12:34:39 -0800 MIME-Version: 1.0 Sent to CCL by: Joe Corkery [jcorkery]_[eyesopen.com] --_000_C935280FAC38jcorkeryeyesopencom_ Content-Type: text/plain; charset="Windows-1252" Content-Transfer-Encoding: quoted-printable Dear Customers, Users, and Programmers, I=92m happy to announce that the twelfth annual CUP meeting will be held Mo= nday March 7th to Wednesday the 9th in Santa Fe, New Mexico. As with last = year, the conference will be held at the wonderful Eldorado Hotel (http://w= ww.eldoradohotel.com). We have an exciting s= chedule (listed below) which includes sessions on theoretical and experimen= tal methods, prediction beyond discovery, shape and electrostatics, myths i= n modeling and the future of computing. In addition, Monday night we will h= ave our now traditional poster session. We are also planning a pre-meeting = session on toolkit programming for Sunday afternoon (March 6th) and a train= ing program on Thursday and Friday (March 10-11). The conference, as always= , does not have a registration fee, but we do ask you to register at: http:= //www.eyesopen.com/cup12-registration. I do hope that you can join us for w= hat promises to be one of the best CUP meetings yet. There are only one or = two speaking slots still available, so if you are interested in speaking at= one of the industry's most animated meetings, please provide a title and a= bstract when you register. Poster submissions can also be made at the same = time. Additional details about the meeting can be found at: http://www.eyes= open.com/events/cup12. Best regards and wishes for the holiday season. Anthony Nicholls, PhD. CEO, OpenEye Scientific Software, Inc. Sessions Sunday Afternoon: "Toolkit Session" Monday Morning: "Experimental data that theorists could and should use" Stephen Martin, U. Texas at Austin, "Correlating Structure and Energetics i= n Protein-Ligand Interactions: Paradigms and Paradoxes" Mike Doyle, Bristol Myers Squibb, "Calorimetric Measurement Ligand-Binding = Thermodynamics and Coupled Protonation Reactions." Lyle Isaacs, U. Maryland, =93Cucurbit[n]uril Molecular Containers=94 Nick Levinson, Stanford, "Mapping binding site electrostatics in protein ki= nases using vibrational Stark effect spectroscopy" Marilyn Gunner, City College, New York. "Tribulations of an experimentalist= who tries to model her own data" Monday Afternoon: "Theorists who calculates things experimentalists might want to measure" Jens Erik Nielsen, U. Dublin, Ireland, "Developing theoretical models for p= rotein electrostatics consistent with multiple types of experimental data". OpenEye, "Fast Evaluations of Molecular Entropy" Kennie Merz, Quantum Theory Project, U. Florida., "A little Experimental In= formation Goes a Long Way to Making Things Right" Mike Gilson, UCSD, "Computational modeling of host-guest and protein-ligand= binding" Vijay Pande, Stanford, =93If we can put a man on the moon, why can't we put= metal in a microwave? Some thoughts on the fundamental limitations of pred= icting experiments.=94 Monday Evening: Poster Session Tuesday Morning: "Predictive methods beyond discovery" - Derek Debe, guest organizer. Steve Muchmore, Abbott Labs, "Amorphous Blobs of Hope and Other Flights of= Fancy" Matthew Segall, Optibrium, "Guiding the design of high quality compounds in= drug discovery" Brian Goldman, Vertex Pharmaceuticals, TBA Derek Debe, Abbott Labs, "ALOHA: A generalized probability fusion approach = to scoring multi-parameter drug-likeness during the lead optimization stage= of drug discovery" Tuesday Afternoon: "Myths of Modelling" Helen Bermann, Rutgers U., RCSB, "Effective uses of the Protein Data Bank: = the do's and the don'ts" Chris Williams, Chemical Computing Group, "Recent Experiences with Chaos in= Docking" Stephen Johnson, Bristol Meyers Squibb, "The myths of prospective QSAR" Ajay Jain, UCSF, "Two BIG Myths!" Levinthal Lecture: Julian Baggini, Author & Philosopher, "Mapping the moral minefield" Wednesday Morning: "Shape and Electrostatics" Tony Slater, pKaData Ltd. "Shaping the electrostatics with some experimenta= l pKa data." Ben Ellingson, OpenEye, =93Comparison of pattern-based and algorithm-based = approaches to tautomer informatics=94 OpenEye, "Discrete Water Modeling with SZMAP" Scott Brown, Abbott Labs, "A Probabilistic Framework for Structure- and Li= gand-Based Virtual Screening" Wednesday Afternoon: "Future Computing" Alan Aspuru-Guzik, Harvard, "Quantum computation for quantum chemistry, dyn= amics and lattice model folding" Brian Cole, OpenEye, "ROCking the GPU" Pat Walters, Vertex, =93How GPU-Based Cheminformatics Saved My Sanity" Frank Brown, CSO, Accelrys, =93Different decade, same story=94 Wednesday Evening: Conference dinner Thursday through Friday: Training Program - "Creating Applications with Python =96 OEChem" --_000_C935280FAC38jcorkeryeyesopencom_ Content-Type: text/html; charset="Windows-1252" Content-Transfer-Encoding: quoted-printable
Dear Customers, Users, and Programmers,
=
=
=
I=92m happy to announce that the twelfth annual = CUP meeting will be held Monday March 7th to Wednesday the 9th in Santa Fe,= New Mexico.  As with last year, the conference will be held at the wo= nderful Eldorado Hotel (http://ww= w.eldoradohotel.com). We have an exciting schedule (listed below
=
) which includes sessions on theoretic= al and experimental methods, prediction beyond discovery, shape and electro= statics, myths in modeling and the future of computing. In addition, Monday= night we will have our now traditional poster session. We are also plannin= g a pre-meeting session on toolkit programming for Sunday afternoon (March = 6th) and a training program on Thursday and Friday (March 10-11). The confe= rence, as always, does not have a registration fee, but we do ask you to re= gister at: http= ://www.eyesopen.com/cup12-registration. I do hope that you can join us = for what promises to be one of the best CUP meetings yet. There are only one or two speak= ing slots still available, so if you are interested in speaking at one of t= he industry's most animated meetings, please provide a title and abstract w= hen you register. Poster submissions can also be made at the same time. Add= itional details about the meeting can be found at: http://www.eyesopen.com/events/cup12.

Best regards and wishes for the holiday season.

An= thony Nicholls, PhD.
CEO, OpenEye Scientific Software, Inc.

Se= ssions

Su= nday Afternoon:
"Toolkit Session"

Monday Mornin= g:
"Experimental data that theorists could and should use"=

Stephen Martin, U. Texas at Austin, "Correlating Structure and= Energetics in Protein-Ligand Interactions: Paradigms and Paradoxes"Mike Doyle, Bristol Myers Squibb, "Calorimetric Measurement Ligand-B= inding Thermodynamics and Coupled Protonation Reactions."
Lyle Isaa= cs, U. Maryland, =93Cucurbit[n]uril Molecular Containers=94
Nick Levinso= n, Stanford, "Mapping binding site electrostatics in protein kinases u= sing vibrational Stark effect spectroscopy"
Marilyn Gunner, City Co= llege, New York. "Tribulations of an experimentalist who tries to mode= l her own data"

Monday Afternoon:
"Theorists who= calculates things experimentalists might want to measure"
<= /font>

Jens Erik Nielsen, U. Dublin, Irelan= d, "Developing theoretical models for protein electrostatics consisten= t with multiple types of experimental data".
OpenEye, "Fast Ev= aluations of Molecular Entropy"
Kennie Merz, Quantum Theory Project= , U. Florida., "A little Experimental Information Goes a Long Way to M= aking Things Right"
Mike Gilson, UCSD, "Computational modeling= of host-guest and protein-ligand binding"
Vijay Pande, Stanford, = =93If we can put a man on the moon, why can't we put metal in a microwave? = Some thoughts on the fundamental limitations of predicting experiments.=94<= br>
Monday Evening: Poster Session

Tuesday Morning:
=
"Predictive methods beyond discovery" - Derek Debe, guest org= anizer.

Steve Muchmore, = Abbott Labs, <= span style=3D"font-size: 11pt; "> "Amorphous Blobs of= Hope and Other Flights of Fancy"
Matthew Sega= ll, Optibrium, "Guiding the design of high quality compounds in drug d= iscovery"
Brian Goldman, Vertex Pharmaceuticals, TBA
Derek Debe,= Abbott Labs, "ALOHA: A generalized probability fusion approach to sco= ring multi-parameter drug-likeness during the lead optimization stage of dr= ug discovery"

Tuesday Afternoon:
"Myths of Model= ling" 

=
Helen Be= rmann, Rutgers U., RCSB, "Effective uses of the Protein Data Bank: the= do's and the don'ts"
Chris Williams, Chemical Computing Group, &qu= ot;Recent Experiences with Chaos in Docking"
Stephen Johnson, Brist= ol Meyers Squibb, "The myths of prospective QSAR" 
Ajay J= ain, UCSF, "Two BIG Myths!"

Levinthal Lecture:
J= ulian Baggini, Author & Philosopher, "Mapping the moral minefield&= quot;

Wednesday Morning:
"Shape and Electrostatics&qu= ot;

Tony Slater, pKaData = Ltd. "Shaping the electrostatics with some experimental pKa data."= ;
Ben Ellingson, OpenEye, =93Comparison of pattern-based and algorithm-b= ased approaches to tautomer informatics=94
OpenEye, "Discrete Water= Modeling with SZMAP"
Scott Brown, Abbott Labs,  "A = Probabilistic Framework for Structure- and Ligand-Based Virtual Screening&q= uot;

Wednesday Afternoon:
"Future Co= mputing"

Alan= Aspuru-Guzik, Harvard, "Quantum computation for quantum chemistry, dy= namics and lattice model folding"
Brian Cole, OpenEye, "ROCkin= g the GPU"
Pat Walters, Vertex, =93How GPU-Based Cheminformatics Sa= ved My Sanity" 
Frank Brown, CSO, Accelrys, =93Different decad= e, same story=94

Wednesday Evening: Conference dinner
<= /font>

Thursday through Fri= day:
Training Program - "Creating Applications with Pyth= on =96 OEChem"

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