From owner-chemistry@ccl.net Sun Aug 31 16:18:00 2008
From: "Cesar Millan pachequin^^gmail.com" <owner-chemistry*o*server.ccl.net>
To: CCL
Subject: CCL: DNA base pair step parameters from DCD trajectory
Message-Id: <-37688-080831161637-14230-K1J6JHArQCqeuyhkWBCMAQ*o*server.ccl.net>
X-Original-From: "Cesar  Millan" <pachequin++gmail.com>
Date: Sun, 31 Aug 2008 16:16:33 -0400


Sent to CCL by: "Cesar  Millan" [pachequin#gmail.com]
Hi everyone, I want to analyze a DNA trajectory generated by NAMD and obtain the different base pair step parameters for each frame (shift, rise, roll, etc). I used to do this using Dials and Windows but it does not work in Linux based machines. Does anyone knows any software running in linux that I could use to do this analysis?

Thank you in advance

Cesar