CCL: Suitable Basis set for Hg(II) Calculation
- From: "Pezhman Zarabadip-Poor" <pzarabadip ~
gmail.com>
- Subject: CCL: Suitable Basis set for Hg(II) Calculation
- Date: Mon, 28 Nov 2011 08:39:13 +0330
Sent to CCL by: "Pezhman Zarabadip-Poor" [pzarabadip ~ gmail.com]
Dear Ted,
I have not employed mentioned Stuttgart basis sets yet. I think I should try
them and evaluate the results. Until now I used LANL2DZ, aug-cc-pVDZ--->QZ,
and def2-TZVP basis sets.
The starting point of these calculations is based on a published paper in
which the authors used LANL2DZ for Hg(II) ions and claimed that these ions
coordinate to two oxygen atoms of sulfonic acid groups of the main molecule.
According to the nature of this interaction which is electrostatic one
between Hg(2+) and one negatively charged oxygen I guessed that maybe this
proposed structure is not correct. Then, I checked the structure with other
basis sets and obtained the structure which I expected (Hg(2+) is in
interaction with one oxygen atom on each sulfonic acid group). Then, I came
to this point that is my guess and consequent conclusion is correct or the
used basis set was not suitable for this system and brought me to a expected
point but on a wrong way?!
I think maybe I should try LANL2TZ and check the results too?!
Best regards,
Pezhman
-----Original Message-----
> From: owner-chemistry+pzarabadip==gmail.com%%ccl.net
[mailto:owner-chemistry+pzarabadip==gmail.com%%ccl.net] On
Behalf Of Theodore
S. Dibble tsdibble*o*esf.edu
Sent: Monday, November 28, 2011 5:42 AM
To: Zarabadi-Poor, Pezhman
Subject: CCL: Suitable Basis set for Hg(II) Calculation
Sent to CCL by: "Theodore S. Dibble" [tsdibble##esf.edu]
Pezhman,
In general, one expects the LANL2DZ basis set is far surpassed by the
Stuttgart basis sets, available at
http://www.theochem.uni-stuttgart.de/pseudopotentials/index.en.html.
This
site provides ECPs and matching correlation-consistent basis sets for the
outer electrons.
It is certainly possible that LANL2DZ actually performs better than more
recent basis sets for certain classes of problems. Are there experimental
data sets you can use to validate your methods?
Best wishes,
Ted Dibble
Theodore S. Dibble
Professor of Chemistry
SUNY-Environmental Science and Forestry
1 Forestry Drive
Syracuse, NY 13210
(315) 470-6596
(315) 470-6856 (fax)
http://www.esf.edu/chemistry/faculty/dibble.htm
> "Pezhman Zarabadi-Poor pzarabadip]~[gmail.com" wrote:
>
> Sent to CCL by: "Pezhman Zarabadi-Poor" [pzarabadip/a\gmail.com]
> Dear CCL users,
>
> I am planning to do some DFT and TDDFT calculations on a complex of Hg(II)
and
> a naphthalene sulfonic acid derivative. I searched through the literature
and
> found that some of previous computational works have employed ECP-LANL2DZ
for
> Hg(II). Is it a good suggestion for doing such calculations? I checked the
> larger basis sets such as aug-cc-pVDZ to QZ but I obtained a little bit
> different results than the published ones? According to the consultant
with an
> expert person, there is guess that maybe employing larger basis sets makes
Hg
> ions too soft and makes the results wrong!
>
> Your suggestions about the appropriate method/basis sets are highly
> appreciated.
>
> Best regards,
> Pezhman Zarabadi-Poorhttp://www.ccl.net/cgi-bin/ccl/send_ccl_messagehttp-:-//www.ccl.net/chemistry/sub_unsub.shtmlhttp-:-//www.ccl.net/spammers.txt