CCL: Protein Flexibility Analysis


I have used spartan and hyperchem quite alot. I didnt know molecular dynamics software such as namd could be used to find the flexible residues in proteins. I will look into this topic more. Thanks.

On 9/4/07, chupvl <> wrote:

Sent to CCL by: chupvl [chupvl**]


you can make it with any molecular dynamics or NMA software
NMA software example

Chupakhin Vladimir,
Dpt. of Chemistry, Moscow State University,
Moscow, Russia

Konrad Hinsen hinsen-.- wrote:
> Sent to CCL by: "Konrad  Hinsen" [hinsen##cnrs-]
>> Sent to CCL by: "Sina  T  reli" [sinatureli]|[]
>> Hello,
>> Do you know any software that can make protein flexibility analysis
>> other than M^2AP and FIRST, which I am already aware of.
> Please have a look at DomainFinder, available from
> -
> ---------------------------------------------------------------------
> Konrad Hinsen
> Centre de Biophysique Molculaire, CNRS Orlans
> Synchrotron Soleil - Division Expriences
> Saint Aubin - BP 48
> 91192 Gif sur Yvette Cedex, France
> Tel. +33-1 69 35 97 15
> E-Mail:
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