CCL: Protein Flexibility Analysis

Hello,

I have used spartan and hyperchem quite alot. I didnt know molecular dynamics software such as namd could be used to find the flexible residues in proteins. I will look into this topic more. Thanks.

On 9/4/07, chupvl chupvl%%gmail.com <owner-chemistry:_:ccl.net> wrote:

Sent to CCL by: chupvl [chupvl**gmail.com]

Hello,

you can make it with any molecular dynamics or NMA software
http://en.wikipedia.org/wiki/Molecular_dynamics
NMA software example http://www.igs.cnrs-mrs.fr/elnemo/

Chupakhin Vladimir,
Dpt. of Chemistry, Moscow State University,
Moscow, Russia

Konrad Hinsen hinsen-.- cnrs-orleans.fr wrote:
> Sent to CCL by: "Konrad  Hinsen" [hinsen##cnrs- orleans.fr]
>
>> Sent to CCL by: "Sina  T  reli" [sinatureli]|[ gmail.com]
>> Hello,
>>
>> Do you know any software that can make protein flexibility analysis
>> other than M^2AP and FIRST, which I am already aware of.
>>
>
> Please have a look at DomainFinder, available from
>
>     http://dirac.cnrs-orleans.fr/DomainFinder/
>
> -
> ---------------------------------------------------------------------
> Konrad Hinsen
> Centre de Biophysique Molculaire, CNRS Orlans
> Synchrotron Soleil - Division Expriences
> Saint Aubin - BP 48
> 91192 Gif sur Yvette Cedex, France
> Tel. +33-1 69 35 97 15
> E-Mail: hinsen%%cnrs-orleans.fr
> --------------------------------------------------------------------->
>
>
>
>



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