CCL: docking papers and structure analysis



dear all,

Can any one tell if there is any research worked published on this work- i.e.
done homology modeling, predicted binding pockets and did protein-protein
docking with those homology models,

actually i have done the same but findng little difficult or rather
confused how to put the results on paper, if any one can send me the paper
or give me the reference, that will be of great help to me,
 
also Can any one tell me if there is any server, which ld give us the information about possible hydrophobic interactions and disulphide bridges between the residues when a pdb structure is given

Thank you in advance,

P.Kalyan
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