CCL: Conformational Changes - Animation

["Sten Nilsson Lill" <stenil]_[chem.gu.se>]

 Sent to CCL by: "Sten Nilsson Lill" [stenil]![chem.gu.se]
 Hi,
 with VMD I have rendered snapshots of an enzyme along a reaction profile.
 Then it was simple to add the snapshots together to form a movie using
 Windows Movie Maker.
 An alternative might be to generate a morph between two different
 conformations/states. For example if you have two crystal structures which
 differ in some domain movement you can generate a morph to visualize the
 movement. I used the web-based tool at http://www.molmovdb.org/ which
 works really great.
 Hope this helps,
 Sten
 > Sent to CCL by: "Veer  Shanmugasundaram"
 > [Veerabahu.Shanmugasundaram()pfizer.com]
 >
 > Dear CCL'ers:
 >
 > What are some nice tools that you have used to take multiple
 > conformational states of say a protein structure/model and show
 > conformational changes between these states as an animated movie in a
 > presentation.
 >
 > Thanks in advance,
 > Veer
 > ----
 > Veer Shanmugasundaram, Ph.D
 > Computer-Assisted Drug Discovery,
 > Pfizer Global Research & Development,
 > 2800 Plymouth Road,
 > Ann Arbor, MI 48105.
 > Tel:(734)622-7131
 > Fax:(734)622-2782
 > Email:Veerabahu.Shanmugasundaram-x-pfizer.com>
 >
 >
 >
 Ph. D. Sten Nilsson Lill
 Dep. of Chemistry
 Göteborg University
 Kemigården 4
 S-412 96 Göteborg, Sweden
 Phone: +46-31-772 2901
 Fax: +46-31-772 3840
 E-mail: stenil a chem.gu.se
 Alternative e-mail: slill1 a lsu.edu