CCL: clarification



 Sent to CCL by: Rick Venable [rvenable!^!pollux.cber.nih.gov]
 For info and help with AMBER, try  http://amber.scripps.edu/
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 Rick Venable           29/500
 FDA/CBER/OVRR Biophysics Lab
 1401 Rockville Pike    HFM-419
 Rockville, MD  20852-1448  U.S.A.
 (301) 496-1905  Rick_Venable AT nih*gov
 ALT email:  rvenable AT speakeasy*org
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 On Wed, 4 Jan 2006, naga raja nagaraj_smart1984:-:yahoo.com wrote:
 > respected sir/madam;
 >                    i am from mk univesity in India.we r buying
 >           software amber8 have lot of douts are there . so u pls help
 >           me for these things. sir we are create a new pdb file and
 >           use XLEaP loading amber edit these these same pdb atoms are
 >           opened but bonds are not there .just simple porphyrin we r
 >           created errors display following contents
 >   FATAL: Atom .R<DEF 1> .A<c16 1>does not have a type
 >   same above but the atom numberchanges continued
 >   ..................
 >   .................
 >   ..........
 >   warning:close condact of 2.18 3717 angstroms between .R <DEF 1 >.A
 >   <c16 1> and .R<DEF 1>.A<c15 2> 38 errors warning 42 u
 pls help me