aminoacid similarity matrices
- From: "Dimitris Agrafiotis" <dimitris { *at * }
3dp.com>
- Subject: aminoacid similarity matrices
- Date: Mon, 16 Sep 1996 11:30:20 -0400
I am trying to find all the available aminoacid scoring matrices that
are used for analyzing protein sequences (eg for phylogenetic analysis,
sequence alignment, homology modeling etc). So far, I got my hands
on the Dayhoff matrix (many versions of it) which measures the evolu-
tionary distance between the aminoacids. I know people have constructed
similarity matrices based on physicochemical properties, tertiary
structure alignments etc, but I can't locate them on the web. Your
help would be greatly appreciated.
Thanks,
--
Dimitris K. Agrafiotis, PhD | e-mail: dimitris { *at * } 3dp.com
Senior Fellow | tel: (610) 458-6045
3-Dimensional Pharmaceuticals, Inc. | fax: (610) 458-8249
665 Stockton Drive, Suite 104
Exton, PA 19341