From owner-chemistry -8 at 8- ccl.net Wed Sep 5 14:54:00 2007 From: "=?ISO-8859-1?Q?Sina_T=FCreli?= sinatureli]^[gmail.com" To: CCL Subject: CCL: Protein Flexibility Analysis Message-Id: <-35088-070905142550-28120-dQzLCgldDzoBooaMiet3ug : server.ccl.net> X-Original-From: "=?ISO-8859-1?Q?Sina_T=FCreli?=" Content-Type: multipart/alternative; boundary="----=_Part_11708_26069048.1189013277442" Date: Wed, 5 Sep 2007 20:27:57 +0300 MIME-Version: 1.0 Sent to CCL by: "=?ISO-8859-1?Q?Sina_T=FCreli?=" [sinatureli**gmail.com] ------=_Part_11708_26069048.1189013277442 Content-Type: text/plain; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit Content-Disposition: inline Hello, I have used spartan and hyperchem quite alot. I didnt know molecular dynamics software such as namd could be used to find the flexible residues in proteins. I will look into this topic more. Thanks. On 9/4/07, chupvl chupvl%%gmail.com wrote: > > > Sent to CCL by: chupvl [chupvl**gmail.com] > > Hello, > > you can make it with any molecular dynamics or NMA software > http://en.wikipedia.org/wiki/Molecular_dynamics > NMA software example http://www.igs.cnrs-mrs.fr/elnemo/ > > Chupakhin Vladimir, > Dpt. of Chemistry, Moscow State University, > Moscow, Russia > > Konrad Hinsen hinsen-.- cnrs-orleans.fr wrote: > > Sent to CCL by: "Konrad Hinsen" [hinsen##cnrs-orleans.fr] > > > >> Sent to CCL by: "Sina T reli" [sinatureli]|[ gmail.com] > >> Hello, > >> > >> Do you know any software that can make protein flexibility analysis > >> other than M^2AP and FIRST, which I am already aware of. > >> > > > > Please have a look at DomainFinder, available from > > > > http://dirac.cnrs-orleans.fr/DomainFinder/ > > > > - > > --------------------------------------------------------------------- > > Konrad Hinsen > > Centre de Biophysique Molculaire, CNRS Orlans > > Synchrotron Soleil - Division Expriences > > Saint Aubin - BP 48 > > 91192 Gif sur Yvette Cedex, France > > Tel. +33-1 69 35 97 15 > > E-Mail: hinsen%%cnrs-orleans.fr > > ---------------------------------------------------------------------> > > > ------=_Part_11708_26069048.1189013277442 Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: 7bit Content-Disposition: inline Hello,

I have used spartan and hyperchem quite alot. I didnt know molecular dynamics software such as namd could be used to find the flexible residues in proteins. I will look into this topic more. Thanks.

On 9/4/07, chupvl chupvl%%gmail.com <owner-chemistry:_:ccl.net> wrote:

Sent to CCL by: chupvl [chupvl**gmail.com]

Hello,

you can make it with any molecular dynamics or NMA software
http://en.wikipedia.org/wiki/Molecular_dynamics
NMA software example http://www.igs.cnrs-mrs.fr/elnemo/

Chupakhin Vladimir,
Dpt. of Chemistry, Moscow State University,
Moscow, Russia

Konrad Hinsen hinsen-.- cnrs-orleans.fr wrote:
> Sent to CCL by: "Konrad  Hinsen" [hinsen##cnrs- orleans.fr]
>
>> Sent to CCL by: "Sina  T  reli" [sinatureli]|[ gmail.com]
>> Hello,
>>
>> Do you know any software that can make protein flexibility analysis
>> other than M^2AP and FIRST, which I am already aware of.
>>
>
> Please have a look at DomainFinder, available from
>
>     http://dirac.cnrs-orleans.fr/DomainFinder/
>
> -
> ---------------------------------------------------------------------
> Konrad Hinsen
> Centre de Biophysique Molculaire, CNRS Orlans
> Synchrotron Soleil - Division Expriences
> Saint Aubin - BP 48
> 91192 Gif sur Yvette Cedex, France
> Tel. +33-1 69 35 97 15
> E-Mail: hinsen%%cnrs-orleans.fr
> --------------------------------------------------------------------->
>
>
>
>



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