From chemistry-request[ AT ]ccl.net Mon Jun 6 18:30:54 2005 Received: from mail.iinet.net.au (mail-02.iinet.net.au [203.59.3.34]) by server.ccl.net (8.13.1/8.13.1) with SMTP id j56MUkm3003060 for ; Mon, 6 Jun 2005 18:30:48 -0400 Received: (qmail 9931 invoked from network); 6 Jun 2005 22:30:32 -0000 Received: from unknown (HELO octa4.net.au) (203.217.43.109) by mail.iinet.net.au with SMTP; 6 Jun 2005 22:30:31 -0000 Received: by octa4.net.au (sSMTP sendmail emulation); Tue, 7 Jun 2005 08:29:44 +0930 Date: Tue, 7 Jun 2005 08:29:44 +0930 From: Brian Salter-Duke To: chemistry_at_ccl.net Subject: Re: CCL:W:gOpenMol and Gamess MO plotting Message-ID: <20050606225944.GB3561 #at# bsalterduke1> Mail-Followup-To: chemistry_at_ccl.net References: <200506030511.j535B9ba021246_at_server.ccl.net> Mime-Version: 1.0 Content-Type: text/plain; charset=us-ascii Content-Disposition: inline In-Reply-To: User-Agent: Mutt/1.4i X-Spam-Status: No, score=0.1 required=5.0 tests=FORGED_RCVD_HELO autolearn=failed version=3.0.3 X-Spam-Checker-Version: SpamAssassin 3.0.3 (2005-04-27) on server.ccl.net On Mon, Jun 06, 2005 at 10:19:15AM +0200, Fco. Javier Modrego wrote: > At 01:11 -0400 3/6/05, Gustavo, , Mercier wrote: > >Hi! > > > >I am interested in plotting MO's computed using GAMESS-US. I've > >tried several programs with limited succes (molden, molekel, > >orbdraw) and now I am trying gOpenMol. > > > >Looking at the manual etc I need to generate a cube file that will > >be converted to the plt format read by gOpenMol using a plugin. > >However, it is not clear to me how to generate the cube file using > >GAMESS-US. > > Look at the keyword PLTORB in the $CONTRL section of the Gamess' > manual, then as stated in the gOpenMol pages, use Gamess2plt to > convert a Gamess "cube" PUNCH file to a plt file. Otherwise if you > can use a Mac , the program MacMolPlt is the easiest way of doing > what you need. I thought that PLTORB and cube were completely different. PLTORB gives a 2-dimensional grid but this is calculated in the pltorb graphics program > from the data in the PUNCH file. A cube file contains the values in a 3-dimension grid that can indeed be translated into a plt file for gOpenMol. I do not see how PLTORB in $CONTRL can give you anything that can be used by gOpenMol. Am I confused? > > I hope this can help you, > > Dr. F.J. Modrego > Department of Inorganic Chemistry > Facultad de Ciencias > University of Zaragoza > 50009 ZARAGOZA > SPAIN > Tel <34>-976-762288 > Fax <34>-976-761187 > E-mail: modrego_at_unizar.es > > > -= This is automatically added to each message by the mailing script =- > To send e-mail to subscribers of CCL put the string CCL: on your Subject: > line > and send your message to: CHEMISTRY_at_ccl.net > > Send your subscription/unsubscription requests to: > CHEMISTRY-REQUEST_at_ccl.net HOME Page: http://www.ccl.net | Jobs Page: > http://www.ccl.net/jobs > If your is mail bouncing from ccl.net domain due to spam filters, please > use the Web based form from CCL Home Page > -+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+ > > > -- Brian Salter-Duke (Brian Duke) b_duke_at_octa4.net.au Post: 626 Melbourne Road, Spotswood, Vic 3015, Australia. Phone: 03-93992847. Web: http://members.iinet.net.au/~linden1/brian/ Honorary Researcher, Chemistry, Melbourne Univ, & Med. Chem., Monash Univ.