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- active
- animate command
- animation
,
- animation
- amount
- appending
- delete
- goto end
- goto start
- jump
- loop
- loop
- loop
- once
- rock
- pause
- play
,
- read
- skip
- speed
- step
,
- style
- style
- Loop
- once
- Rock
- write
- antialiasing
- axes
- axes command
- Babel
- bonds
- determining
- unusual
- bonds representation
- clipping planes
- color
- background
- category
- map
- scale
- color command
- ColorID
- color map
- CPK
- debug command
- depth cue
- display
- crosseyes
- crystaleyes
- left
- modes
- orthographic
- perspective
- right
- sidebyside
- stereo off
- display command
- dotted van der Waal representation
- drawn
- echo command
- environment variables
- VMDBABELBIN
- VMDTMPDIR
- exit command
- external command
- eye seperation
- files
- reading
- file types
- input
- fit
- fit
- RMSD
- calculate
- print
- two fragments
- two molecules
- focal length
- form
- animate
- close
- color
- display
- edit animation
- files
- graphics
- label
- main
- molecules
- open
- remote
- render
- sim
- tracker
- frames
- grabber
- help
- help
- specific topic
- help command
- journal command
- keyword
- keyword
- definitions
- label command
- labels
,
- labels
- categories
- delete
,
- delete all
- hide
,
- plotting
- show
,
- light command
- lights
- controlling with mouse
- toggle
- lines representation
- log command
- MDComm
- MDScope
- menu command
- mol command
- molecule
- active
- changing status
- deleting
- drawn
- fixed
- loading
- top
- molecule command
- mouse
- modes
- mouse command
- namd
- picking
- picking
- angle
- angles
- atom
- atoms
,
- bond
- bonds
- center
- dihedral
- dihedrals
- distances
- move atom
- move fragment
- move residue
- query
- play command
- pointer
- points representation
- quit
- quit command
- quoting
- Raster3D
- regular expression
- remote command
- remote connection
,
- remote connection
- controlling
- description
- detaching
- initializing
- installation
- killing
- modifiable parameters
- requirements
- starting
- troubleshooting
- using
- render command
- rendering
- rendering
- caveats
- representation
- representations
- reset view
- rock
,
- rock command
- rotate command
- rotation
- automatic
- automatic
- rock
- spin
- stop
,
- continuous
- stop
- using mouse
- rotation command
- rot command
- run command
- scale command
- scaling
- short circuit logic
- sim command
- simulation command
- spin
- stage
- stage command
- stereo
- parameters
,
- stereo mode
- stop command
- Tcl
- Tcl-DP
,
,
- TclX
- top
- tracker command
- trans command
- translate command
- translation
- transparent
- user command
- user interfaces
- user interfaces
- 3D
- external
- gesture
- speech
- van der Waal representation
- view
- view
- adding
- deleting
- viewing modes
- changing
- views
- VMD
- vmdinfo command
- vmdlog command
- wait command
Andrew Dalke
Tue May 14 16:49:45 CDT 1996