From chemistry-request@ccl.net Sun Sep 15 11:22:38 1991 Date: Sun, 15 Sep 91 16:26:33 +0200 From: Florian Mueller-Plathe To: CHEMISTRY@ccl.net Subject: Parallel neighbour list Status: R Hi, This is to the person enquiring about how to parallelise a neighbour list for MD. I saw your message and also a few of the replies. Unfortunately, I deleted your user-id. If you send me your user-id, I can mail you a list of references on parallel MD which I compiled about 3 months ago. Cheers Florian Mueller-Plathe (fmp@igc.ethz.ch) From chemistry-request@ccl.net Sun Sep 15 18:18:19 1991 Date: Sun, 15 Sep 91 16:53:17 CDT From: "Dr. Dennis Gerson" To: chemistry@ccl.net Subject: Postscript Printing on Unix Workstations Status: R On any Unix system that supports Display Postscript (such as the RISC System 6000) there is a utility command called "eps" or "encapsulate" in the display postscript subdirectory of /bin or /lpp/bin. The help function man-pages for eps explain the flags. With this command one takes a postscript file and "prints" it to the device driver for the eps printer and creates an eps file or directly sends it to an eps printer. This is how we create eps output on our 6000s using Quanta, LabVision, Insight MS-Word, Wordperfect and Framemaker (the later if we are printing the PS/2 versions on our 6000, the native Unix versions support EPS and PS files directly). This same system would work for the NEXTstation, HP/700s and MACs if they were equipped with the Display Postcript screen handler (default on the NEXTstation and IBM RISC 6000). A second utility of interest is the "xdw" or X-windows-display postscript screen capture program. This utility allows one to capture a Motif window in bit mode and save it as a display postscript file. This is very similar to the "image capture" function within the Framemaker desktop publishing package. We use these capabilities to send "screen images" to our postscript printer and to imbed screen images into our documents. Regards, Dennis J. Gerson, Ph.D. Computational Chemistry Department IBM Technical Computing Systems Dallas Scientific Center email...gerson@dfwvm03.vnet.ibm.com From jkl@ccl.net Sun Sep 15 22:11:35 1991 To: chemistry@ccl.net Subject: Ring currents in stacked DNA bases Date: Sun, 15 Sep 91 22:11:33 EDT From: jkl@ccl.net Status: R I am redirecting to the list due to the mailer problem: Hello Does anyone have an idea of how to calculate the resultant magnetic field due to ring currents of stacked DNA bases of a polynucleotide. This can be done for a single aromatic ring, but can it be done for an assembly of stacked rings like those of DNA ? It would be useful to predict an average shielding (NMR shielding) of nuclei present in the proximity of the bases. jean-rene ALATTIA MONTPELLIER-FRANCE JRENE%CCIVS1@FRMOP53.BITNET CCIPE@FRMOP53.BITNET