From owner-chemistry@ccl.net Tue Sep 14 10:08:00 2021
From: "Artemi Bendandi artemi.bendandi|-|gmail.com" <owner-chemistry.@.server.ccl.net>
To: CCL
Subject: CCL: calculation of mechanical stress on molecule
Message-Id: <-54454-210914054337-19341-f4RJAO7rYTqen/Yuz+/oTw.@.server.ccl.net>
X-Original-From: "Artemi  Bendandi" <artemi.bendandi!=!gmail.com>
Date: Tue, 14 Sep 2021 05:43:35 -0400


Sent to CCL by: "Artemi  Bendandi" [artemi.bendandi!A!gmail.com]
Hi everyone!

I'm writing to ask for suggestions on software with which to calculate mechanical stress on 
atoms/residues on snapshots of an MD trajectory (.pdb files). I found CAMS and mdStress but they don't 
seem to be maintained/documented/used(?). 

I was wondering if anyone had any suggestions. Bear in mind that we need something that works on 
nucleic acids as well as protein.

Thanks in advance!

Cheers,
Artemi Bendandi

Postdoctoral Fellow
PhD, Physics  Computational Biophysicist
Istituto Italiano di Tecnologia (IIT)
Genoa, Italy