From owner-chemistry@ccl.net Thu Aug 4 12:16:00 2016 From: "Utpal Sarkar utpalchemiitkgp[-]gmail.com" To: CCL Subject: CCL:G: Volume of C drive Message-Id: <-52353-160804020343-23620-Mg8pfjGiQCzjNpv+Rkdt/g::server.ccl.net> X-Original-From: Utpal Sarkar Content-Type: multipart/alternative; boundary=001a1142b652e517dd053938b530 Date: Thu, 4 Aug 2016 11:33:35 +0530 MIME-Version: 1.0 Sent to CCL by: Utpal Sarkar [utpalchemiitkgp^^^gmail.com] --001a1142b652e517dd053938b530 Content-Type: text/plain; charset=UTF-8 Dear Partha, once your calculation is over, why not you are removing all the Gau* file from the scratch directory. (ofcourse during running gaussian you cant remove it, since that may couse termination of the running gaussian job) regards Utpal Dr Utpal Sarkar Assistant Professor Department of Physics Assam University Silchar-788011 Assam India On Wed, Aug 3, 2016 at 5:51 PM, Partha Sengupta anapspsmo(a)gmail.com < owner-chemistry]=[ccl.net> wrote: > Elvis Martis, Friend I can't find any file ending with Gau*. But find some > files in scratch with sizes upto 0.2GB. > Advise. > > On Wed, Aug 3, 2016 at 3:10 AM, Renjith Bhaskaran renjithiitg#%#gmail.com > wrote: > >> Looks strange, but I guess this might be due to the .rwf file stored in >> that folder. Make sure your calculation finished successfully (double check >> for any error messages). >> >> >> >> On Tue, Aug 2, 2016 at 1:53 PM, Partha Sengupta anapspsmo**gmail.com < >> owner-chemistry#%#ccl.net> wrote: >> >>> Friends, I am facing a trouble during calculation in Gaussian. Before >>> the calculation starts, the free volume of C drive was 82 GB. But after >>> completion of the job, the free volume reduces to 55GB. The volume of >>> scratch folder become 24 GB. >>> How can I overcome the problem. >>> Help >>> Partha >>> >>> -- >>> >>> >>> *Dr. Partha Sarathi SenguptaAssociate ProfessorVivekananda >>> Mahavidyalaya, Burdwan* >>> >> >> >> >> -- >> >> >> *Have a nice day!with best regards,Renjith Bhaskaran* >> > > > > -- > > > *Dr. Partha Sarathi SenguptaAssociate ProfessorVivekananda Mahavidyalaya, > Burdwan* > --001a1142b652e517dd053938b530 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
Dear Partha,<= br>
=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0= =C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0=C2=A0 once your calculation is over, w= hy not you are removing all the Gau* file from the scratch directory. (ofco= urse during running gaussian you cant remove it, since that may couse termi= nation of the running gaussian job)
=C2=A0
regards
Utp= al

Dr Utpal Sarkar
Assistant Professor
= Department of Physics
Assam University
Silchar-788011
=
Assam
India

On Wed, Aug 3, 2016 at 5:51 PM, Partha Sengupta anapspsm= o(a)gmail.com <owner-chemistry]=[ccl.= net> wrote:
Elvis Martis, Friend I can't find any file ending with Gau*. But= find some files in scratch with sizes upto 0.2GB.
Advise.

On Wed, Aug 3, 2016 at 3:10 AM, Renjith Bhaskaran = renjithiitg#%#gmail.com = <owner-chemistry#,#ccl.net> wrote:
Looks strange, but I guess this migh= t be due to the .rwf file stored in that folder. Make sure your calculation= finished successfully (double check for any error messages).
=


On Tue, Aug 2, 2016 at 1:53 PM, Partha Sengupta anapspsmo= **gmail.com <owner-chemistry#%#ccl.net> wrote:
Friends, I am facing a trouble dur= ing calculation in Gaussian. Before the calculation starts, the free volume= of C drive was 82 GB. But after completion of the job, the free volume red= uces to 55GB. The volume of scratch folder become 24 GB.
How can I= overcome the problem.
Help
Partha
<= div>

--
Dr. Partha Sarathi Sengupta
Associate Professor<= br>Vivekananda Mahavidyalaya, Burdwan



--
Have a nice day!
with best r= egards,
Renjith Bhaskaran




--
Dr. Partha Sarathi Sengupt= a
Associate Professor
Vivekananda Mahavidyalaya, Burdwan

--001a1142b652e517dd053938b530-- From owner-chemistry@ccl.net Thu Aug 4 12:51:00 2016 From: "Nikhil Maroli scinikhil-x-gmail.com" To: CCL Subject: CCL:G: Calculating interaction energy/bond energy between atoms in mole:Gauss Message-Id: <-52354-160804113820-17019-Q1QY/E7gpHW5oeWuhqNlKw---server.ccl.net> X-Original-From: "Nikhil Maroli" Date: Thu, 4 Aug 2016 11:38:19 -0400 Sent to CCL by: "Nikhil Maroli" [scinikhil[#]gmail.com] Dear all, im new to gaussian, i wanted to calculate the interaction energy between the atoms in the molecules (image : https://drive.google.com/file/d/0BxaQk_pcR9vibDhhTzFQQmZjOWM/view? usp=sharing) I know I can use counterpoise method by making it two fragments ,but how it is possible for finding interaction energy between the 1-4,5-28,3-8,11-17. how I make fragments? Any suggestion will be helpful From owner-chemistry@ccl.net Thu Aug 4 14:54:00 2016 From: "Yuanhe Li liyuanhe211^_^163.com" To: CCL Subject: CCL:G: Calculating interaction energy/bond energy between atoms in mole:G Message-Id: <-52355-160804141333-19457-q5o+mdttTnvL+LKrWnLoEg!A!server.ccl.net> X-Original-From: "Yuanhe Li" Date: Thu, 4 Aug 2016 14:13:32 -0400 Sent to CCL by: "Yuanhe Li" [liyuanhe211_._163.com] Counterpoise is a correction for BSSE error in (weak) intermolecular interaction energy. What you want is probably irrelevant to it. If you mean by cutting the 4 bonds:"1-4,5-28,3-8,11-17" simultaneously, splitting the molecule in to two (tetra-radical?) fragment, and you want the interaction between those (roughly equal to the sum of the bond energies). You can just calculate the two fragments A, B, the molecule AB; get the difference of electronic energy. This is a (very) strong interaction, thus no counterpoise is required. However, I can't see why this is meaningful, and the fragment electronic structure might be tricky. If you mean you want the bond energy for each of the 4 bonds, be aware that the bond energy of a bond inside a ring is ambiguous. You have the liberty to design reasonable processes to represent it, like rotating one side of the ring away > from the bonding position, then calculate the singlet biradical. Also one should try to cancel any artificial interaction during the process like steric repulsion. Or you can calculate the Laplacian bond order, which is well correlated with bond energy in organic systems. (Laplacian bond order cannot be calculated by Gaussian, try Multiwfn: https://multiwfn.codeplex.com/) Sent to CCL by: "Nikhil Maroli" [scinikhil[#]gmail.com] Dear all, im new to gaussian, i wanted to calculate the interaction energy between the atoms in the molecules (image : https://drive.google.com/file/d/0BxaQk_pcR9vibDhhTzFQQmZjOWM/view? usp=sharing) I know I can use counterpoise method by making it two fragments ,but how it is possible for finding interaction energy between the 1-4,5-28,3-8,11-17. how I make fragments? Any suggestion will be helpful From owner-chemistry@ccl.net Thu Aug 4 22:32:01 2016 From: "Cina Foroutan-Nejad canyslopus:_:yahoo.co.uk" To: CCL Subject: CCL:G: Calculating interaction energy/bond energy between atoms in mole:G Message-Id: <-52356-160804154421-6046-/Qz+Uktv3h07QkbiwYlZ3g|*|server.ccl.net> X-Original-From: Cina Foroutan-Nejad Content-Type: multipart/alternative; boundary="----=_Part_16769299_2049207895.1470339849062" Date: Thu, 4 Aug 2016 19:44:09 +0000 (UTC) MIME-Version: 1.0 Sent to CCL by: Cina Foroutan-Nejad [canyslopus**yahoo.co.uk] ------=_Part_16769299_2049207895.1470339849062 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable You may compute interaction energy between any pair of atoms within the con= text of Interacting Quantum Atom theory (IQA). IQA analysis provides the en= ergy of each bond but to have "bond dissociation energy" you must have a re= ference state so you should define promotion energy.Yet, I cannot understan= d why you need energy of these bonds. To perform IQA the fastest software t= o the best of my knowledge is AIMAll. Good luck,Cina ---------------------------Cina Foroutan-Nejad, PhDCEITEC-Central European = Institute of TechnologyMasaryk University, Brno, Czech Republichttps://muni= .academia.edu/CinaForoutanNejad=20 On Thursday, 4 August 2016, 21:33, Yuanhe Li liyuanhe211^_^163.com wrote: =20 =20 Sent to CCL by: "Yuanhe=C2=A0 Li" [liyuanhe211_._163.com] Counterpoise is a correction for BSSE error in (weak) intermolecular intera= ction=20 energy. What you want is probably irrelevant to it. If you mean by cutting the 4 bonds:"1-4,5-28,3-8,11-17" simultaneously,=20 splitting the molecule in to two (tetra-radical?) fragment, and you want th= e=20 interaction between those (roughly equal to the sum of the bond energies). = You=20 can just calculate the two fragments A, B, the molecule AB; get the differe= nce=20 of electronic energy. This is a (very) strong interaction, thus no counterp= oise=20 is required. However, I can't see why this is meaningful, and the fragment= =20 electronic structure might be tricky. If you mean you want the bond energy for each of the 4 bonds, be aware that= the=20 bond energy of a bond inside a ring is ambiguous. You have the liberty to d= esign=20 reasonable processes to represent it, like rotating one side of the ring aw= ay=20 > from the bonding position, then calculate the singlet biradical. Also one= should=20 try to cancel any artificial interaction during the process like steric=20 repulsion. Or you can calculate the Laplacian bond order, which is well=20 correlated with bond energy in organic systems. (Laplacian bond order canno= t be=20 calculated by Gaussian, try Multiwfn: https://multiwfn.codeplex.com/) Sent to CCL by: "Nikhil=C2=A0 Maroli" [scinikhil[#]gmail.com]=20 Dear all,=20 im new to gaussian,=20 i wanted to calculate the interaction energy between the atoms in the=C2=A0= =20 molecules (image :=C2=A0=20 https://drive.google.com/file/d/0BxaQk_pcR9vibDhhTzFQQmZjOWM/view? usp=3Dsharing)=20 I know I can use counterpoise method by making it two fragments ,but how it= =C2=A0=20 is possible for finding interaction energy between the 1-4,5-28,3-8,11-17.= =C2=A0=20 how I make fragments?=20 Any suggestion will be helpful -=3D This is automatically added to each message by the mailing script =3D-=C2=A0 =C2=A0 =C2=A0=C2=A0 =C2=A0 =C2=A0Subscribe/Unsubscribe:=20 =C2=A0 =C2=A0 =C2=A0/=C2=A0 =C2=A0 =C2=A0------=_Part_16769299_2049207895.1470339849062 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable
You may compute interaction energy between any pair of = atoms within the context of Interacting Quantum Atom theory (IQA). IQA anal= ysis provides the energy of each bond but to have "bond dissociation energy= " you must have a reference state so you should define promotion energy.
Yet, I cannot understand why you need energy of these = bonds. To perform IQA the fastest software to the best of my knowledge is A= IMAll.

Good luck,=
Cina



---------------------------
Cina Foroutan-Nejad, PhD
CEITEC-Central European Instit= ute of Technology
Masaryk University, Br= no, Czech Republic
https://muni.academia= .edu/CinaForoutanNejad


On Thursday, 4 August 2016, 21:33, Yuanhe Li liyuanhe21= 1^_^163.com <owner-chemistry ~~ ccl.net> wrote:


Sent to CCL by: "Yuanhe  Li" [li= yuanhe211_._163.com]
Counterpoise is a correction for BSSE error in (wea= k) intermolecular interaction
energy. What you want is probably irrelev= ant to it.

If you mean by cutting the 4 bonds:"1-4,5-28,3-8,11-17" s= imultaneously,
splitting the molecule in to two (tetra-radical?) fragme= nt, and you want the
interaction between those (roughly equal to the su= m of the bond energies). You
can just calculate the two fragments A, B,= the molecule AB; get the difference
of electronic energy. This is a (v= ery) strong interaction, thus no counterpoise
is required. However, I c= an't see why this is meaningful, and the fragment
electronic structure = might be tricky.

If you mean you want the bond energy for each of th= e 4 bonds, be aware that the
bond energy of a bond inside a ring is amb= iguous. You have the liberty to design
reasonable processes to represen= t it, like rotating one side of the ring away
> from the bonding pos= ition, then calculate the singlet biradical. Also one should
try to can= cel any artificial interaction during the process like steric
repulsion= . Or you can calculate the Laplacian bond order, which is well
correlat= ed with bond energy in organic systems. (Laplacian bond order cannot be calculated by Gaussian, try Multiwfn: https://multiwfn.codeplex.com/)


Sent to CCL by: "Nikhil  Maroli" [scinikhil[#]gmail.com]
Dear all= ,
im new to gaussian,
i wanted to calculate the interaction energy = between the atoms in the 
molecules (image : 
https://drive.google.com/file/d/0BxaQk_pcR9vibDhhTzFQQmZjOWM/vi= ew?
usp=3Dsharing)

I know I can use counterpoise method by m= aking it two fragments ,but how it 
is possible for finding intera= ction energy between the 1-4,5-28,3-8,11-17. 
how I make fragments= ?
Any suggestion will be helpful



-=3D This is automatica= lly added to each message by the mailing script =3D-
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