From owner-chemistry@ccl.net Mon Mar 14 01:50:00 2011 From: "Rajagopala Reddy seelam srgreddyseelam*o*yahoo.co.in" To: CCL Subject: CCL:G: query regarding crystal structure Message-Id: <-44123-110314014644-6053-uLKFsMDRELJaYPQRwkrGLA- -server.ccl.net> X-Original-From: Rajagopala Reddy seelam Content-Type: multipart/alternative; boundary="0-511338951-1300081595=:10791" Date: Mon, 14 Mar 2011 11:16:35 +0530 (IST) MIME-Version: 1.0 Sent to CCL by: Rajagopala Reddy seelam [srgreddyseelam(0)yahoo.co.in] --0-511338951-1300081595=:10791 Content-Type: text/plain; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable Hi Radek Thank you for sharing your experience. I am reading your paper. I will try= QM/MM method. =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0= =A0 =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 S.Rajagopala Reddy =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 = =A0 =A0 Prof.Mahapatra lab =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0= =A0=A0=A0 School of Chemistry =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0= =A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0=A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0 =A0=A0= University of Hyderabad --- On Sun, 13/3/11, Radoslaw Kaminski rkaminski.rk[A]gmail.com wrote: > From: Radoslaw Kaminski rkaminski.rk[A]gmail.com Subject: CCL:G: query regarding crystal structure To: "Seelam, Rajagopal Reddy " Date: Sunday, 13 March, 2011, 3:43 PM Hi, Concerning crystal-field-constrained optimization you can try to use the QM= /MM method. I have used it for the calculation of excited states in molecul= ar crystals and it works very well. You can check it out in: R. Kaminski. M= . S. Schmokel, P. Coppens, J. Phys. Chem. Lett., 2010, 1, 2349. The reprint= is on my web-site: http://www.chem.uw.edu.pl/people/RKaminski/publications= .html =0A Cheers, Radek 2011/3/13 Rajagopala Reddy Seelam rajagopalaseelam]~[gmail.com =0A =0ASent to CCL by: "Rajagopala Reddy Seelam" [rajagopalaseelam]*[gmail.com] =0AHello CCL subscribers, =0AI have xyz coordinates of a crystal structure solved from X-Ray Diffract= ion Studies. I want to calculate excited states of this molecule using g03.= Please answer me following few queries. =0A =0A1) I am in confusion in deciding to go for either a single point =0A =A0 energy calculation or an optimization. If I optimize the geometry, =0A =A0 the resulting geometry is not as same as the structure obtained =0A =A0 from crystal structure. Rather it will be isomer for the crystal =0A =A0 structure. Which is the best way to proceed for crystal structure ? =0A =0A2) I am getting imaginary frequencies for this structure at single =0A =A0 point energy. In principle we should not get any imaginary frequenc= ies =0A =A0 for stable molecule. What is workaround for this problem. =0A =0AThank you so much =0Abest wishes =0ARajagopala Reddy Seelam =0A =0A =0A =0A-=3D This is automatically added to each message by the mailing script = =3D- =0A =0AE-mail to subscribers: CHEMISTRY*ccl.net or use: =0A =A0 =A0 =A0http://www.ccl.net/cgi-bin/ccl/send_ccl_message =0A =0AE-mail to administrators: CHEMISTRY-REQUEST*ccl.net or use =0A =A0 =A0 =A0http://www.ccl.net/cgi-bin/ccl/send_ccl_message =0A =0A=0A =A0 =A0 =A0http://www.ccl.net/chemistry/sub_unsub.shtml =0A =0A=0A =0A=0A=0A =0A=0A =0A =A0 =A0 =A0http://www.ccl.net/spammers.txt =0A =0A=0A =0A =0A --=20 Radoslaw Kaminski, M.Sc. Eng. Ph.D. Student Crystallochemistry Laboratory Department of Chemistry University of Warsaw Pasteura 1, 02-093 Warszawa, Poland =0Ahttp://www.chem.uw.edu.pl/people/RKaminski/ =0A=0A=0A --0-511338951-1300081595=:10791 Content-Type: text/html; charset=iso-8859-1 Content-Transfer-Encoding: quoted-printable
Hi Radek
Thank you for sharing your experi= ence. I am reading your paper. I will try QM/MM method.

              &= nbsp;                    =              &= nbsp;           &nbs= p;            &= nbsp;           &nbs= p;            &= nbsp;   S.Rajagopala Reddy

         &nbs= p;            &= nbsp;           &nbs= p;            &= nbsp;           &nbs= p;                    &nb= sp;     Prof.Mahapatra lab
           &nb= sp;            =             &nb= sp;            =               &= nbsp;                   &= nbsp;  School of Chemistry
           &nb= sp;            =             &nb= sp;            =             &nb= sp;                    Un= iversity of Hyderabad


--- On Sun, 13/3/11, Radoslaw Kaminski rkamin= ski.rk[A]gmail.com <owner-chemistry|a|ccl.net> wrote:

From: Radoslaw Kaminski rkaminski.rk[A]gmail.com = <owner-chemistry|a|ccl.net>
Subject: CCL:G: query regarding crystal = structure
To: "Seelam, Rajagopal Reddy " <srgreddyseelam|a|yahoo.co.in>
Date: Sunday, 13 March, 2011, 3:43 P= M

Hi,

Concerning crystal-field-cons= trained optimization you can try to use the QM/MM method. I have used it fo= r the calculation of excited states in molecular crystals and it works very= well. You can check it out in: R. Kaminski. M. S. Schmokel, P. Coppens, J.= Phys. Chem. Lett., 2010, 1, 2349. The reprint is on my web-site: http://www.chem.uw.edu.pl/people/RKaminski/publicat= ions.html
=0A
Cheers,

Radek


2011/3/13 Rajagopala Reddy Seelam rajagopalaseelam]~[<= a rel=3D"nofollow" target=3D"_blank" href=3D"http://gmail.com">gmail.com <owner-chemistry*ccl.net>
=0A

=0ASent to CCL by: "Rajag= opala Reddy Seelam" [rajagopalaseelam]*[gmail.com]
=0AHello CCL subscribers,=0AI have xyz coordinates of a crystal structure solved from X-Ray Diffrac= tion Studies. I want to calculate excited states of this molecule using g03= . Please answer me following few queries.
=0A
=0A1) I am in confusion= in deciding to go for either a single point
=0A   energy calculati= on or an optimization. If I optimize the geometry,
=0A   the result= ing geometry is not as same as the structure obtained
=0A   from cr= ystal structure. Rather it will be isomer for the crystal
=0A   str= ucture. Which is the best way to proceed for crystal structure ?
=0A
= =0A2) I am getting imaginary frequencies for this structure at single
= =0A   point energy. In principle we should not get any imaginary frequ= encies
=0A   for stable molecule. What is workaround for this probl= em.
=0A
=0AThank you so much
=0Abest wishes
=0ARajagopala Reddy= Seelam
=0A
=0A
=0A
=0A-=3D This is automatically added to each= message by the mailing script =3D-
=0A
=0AE-mail to subscribers: CHEMISTRY*ccl.net or use:
= =0A      http://www.ccl.net/cgi-bin/ccl/= send_ccl_message
=0A
=0AE-mail to administrators: CHEMISTRY-REQUEST*ccl.net = or use
=0A      http://www.ccl.net/cg= i-bin/ccl/send_ccl_message
=0A
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=0A &= nbsp;    http://www.ccl.net/chemistry/sub_unsub.= shtml
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=0ABefore posting, check wait time at: http://www.ccl.net=0A
=0AJob: http://www.ccl.net/jobs
=0AConferences: http://server.ccl.net/chemistry/announcements/conferences/
=0A
=0ASearch Messages:
http://www.ccl.net/= chemistry/searchccl/index.shtml
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=0ARTFI: http://www.ccl.net/chemistry/aboutccl/instructions/
=0A
=0A=0A



--
Radoslaw Kaminski, = M.Sc. Eng.
Ph.D. Student
Crystallochemistry Laboratory
Department = of Chemistry
University of Warsaw
Pasteura 1, 02-093 Warszawa, Poland=
=0Ahttp://www.chem.uw.edu.pl/people/RKaminski/
= =0A

--0-511338951-1300081595=:10791-- From owner-chemistry@ccl.net Mon Mar 14 05:10:00 2011 From: "Hyunbok Lee mutebeat++gmail.com" To: CCL Subject: CCL: CIF of beta-copper phthalocyanine crystal structure Message-Id: <-44124-110314050839-17579-SDvZVsytDiydtjwew10+SA##server.ccl.net> X-Original-From: "Hyunbok Lee" Date: Mon, 14 Mar 2011 05:08:37 -0400 Sent to CCL by: "Hyunbok Lee" [mutebeat!=!gmail.com] Hello CCL substribers, I'm looking for CIF of the beta-copper phthalocyanine crystal structure. However, I find only alpha-CuPc through google search. Is there anyone have beta-CuPc CIF ? I'll appreciate sharing the file. Thanks in advance. best regards, H. Lee From owner-chemistry@ccl.net Mon Mar 14 06:07:00 2011 From: "Krishna Kuben Govender kk.govender,+,gmail.com" To: CCL Subject: CCL: Running AM1/d-PhoT with CHARMM/MNDO97 interface Message-Id: <-44125-110314060509-30140-VbnlrxofR0lpINGtJSnhRg*server.ccl.net> X-Original-From: "Krishna Kuben Govender" Date: Mon, 14 Mar 2011 06:05:07 -0400 Sent to CCL by: "Krishna Kuben Govender" [kk.govender*gmail.com] Good day everyone. I am currently making use of CHARMM c35b5 and I would like to run a simulation with the AM1/d-PhoT Hamiltonian. Can anyone tell me what the iop value within the MNDO97 input file needs to be in order to be able to run the above mentioned Hamiltonian? I have had a look at the source and discovered that the iop value should be -12, but when I run the simulation the output file tells me that it is using the PM3/d Hamiltonian. Should anyone have any ideas as to what I an doing incorrectly can you please let me know. Thanks. Krishna Kuben Govender Scientific Computing Research Unit Department of Chemistry University of Cape Town From owner-chemistry@ccl.net Mon Mar 14 07:24:00 2011 From: "Andrew Voronkov drugdesign##yandex.ru" To: CCL Subject: CCL: software or script to visualize chemical evolution tree Message-Id: <-44126-110314071847-10006-ohTMDcEkEI7Db1DhoCF7Pg(a)server.ccl.net> X-Original-From: Andrew Voronkov Content-Transfer-Encoding: 7bit Content-Type: text/plain Date: Mon, 14 Mar 2011 14:18:38 +0300 MIME-Version: 1.0 Sent to CCL by: Andrew Voronkov [drugdesign~!~yandex.ru] I have a desire to depict process of hit-to lead development and lead optimization in a tree-like manner. But I became curious if there are any tools which may assist to visualize such an evolution - for example I enter the initial hit and then a number of derivatives, then some of these derivatives have other derivatives etc. Something like phylogenetic tree, but with taking into account the chemical similarity. If you are aware of any of such tools or approaches, please give the name of software, or links to some publications or algorithms. Probably there is some special term for this field of chemoinformatics. This is nothing to do with PCA and diversity selection, this is something between data management and workflow description from one side and similarity evaluation from another. Best regards, Andrew From owner-chemistry@ccl.net Mon Mar 14 07:58:01 2011 From: "a aloy bella aloysius.bella() gmail.com" To: CCL Subject: CCL:G: emission spectra Message-Id: <-44127-110314053955-14002-o++VWANh7RaoEs0wAwFCWQ*_*server.ccl.net> X-Original-From: "a aloy bella" Date: Mon, 14 Mar 2011 05:39:53 -0400 Sent to CCL by: "a aloy bella" [aloysius.bella*gmail.com] Hi all, i am a beginner in gaussian. i have put TDDFT calculation for some (DFT optimised)pi conjugated heterocyclic systems. The keyword i used is : #p td=(nstates=10) b3lyp/6-31g(d) gfinput iop(6/40=1) extralinks=1607 pop=full scrf=(solvent=dichloromethane,pcm) > From the output data, How to find out emission spectra values? Kindly reply.Lot of thanks in advance. A. Bella aloysius.bella[#]gmail.com From owner-chemistry@ccl.net Mon Mar 14 08:41:00 2011 From: "Rajarshi Guha rajarshi.guha.++.gmail.com" To: CCL Subject: CCL: software or script to visualize chemical evolution tree Message-Id: <-44128-110314083951-9712-yGGP5e/bi0doIbpsrsHzoQ++server.ccl.net> X-Original-From: Rajarshi Guha Content-Transfer-Encoding: 8bit Content-Type: text/plain; charset=ISO-8859-1 Date: Mon, 14 Mar 2011 08:39:43 -0400 MIME-Version: 1.0 Sent to CCL by: Rajarshi Guha [rajarshi.guha!=!gmail.com] I assume you have the series of molecules that progressed through the optimization stages. I'm not aware of a ready made tool that does what you do - but it should be easy to put together and layout in a hierarchical form. A tool that comes somewhat close is the ScaffoldHunter (http://scaffoldhunter.sourceforge.net/about.html). Another tool that might address your problem somewhat is the SALI Viewer (http://sali.rguha.net/), though it's focus is more on highlighting activity cliffs in a SAR dataset On Mon, Mar 14, 2011 at 7:18 AM, Andrew Voronkov drugdesign##yandex.ru wrote: > > Sent to CCL by: Andrew Voronkov [drugdesign~!~yandex.ru] > I have a desire to depict process of hit-to lead development and lead optimization in a tree-like manner. But I became curious if there are  any tools which may assist to visualize such an evolution - for example I enter the initial hit and then a number of derivatives, then some of these derivatives have other derivatives etc. Something like phylogenetic tree, but with taking into account the chemical similarity. If you are aware of any of such tools or approaches, please give the name of software, or links to some publications or algorithms. Probably there is some special term for this field of chemoinformatics. This is nothing to do with PCA and diversity selection, this is something between data management and workflow description from one side and similarity evaluation from another. > > > Best regards, > Andrew>      http://www.ccl.net/cgi-bin/ccl/send_ccl_message>      http://www.ccl.net/cgi-bin/ccl/send_ccl_message>      http://www.ccl.net/chemistry/sub_unsub.shtml>      http://www.ccl.net/spammers.txt> > > -- Rajarshi Guha NIH Chemical Genomics Center From owner-chemistry@ccl.net Mon Mar 14 09:46:00 2011 From: "Chris Swain swain||mac.com" To: CCL Subject: CCL: software or script to visualize chemical evolution tree Message-Id: <-44129-110314094352-1091-Z9vtNUPuEsbdMkVlln6txg%server.ccl.net> X-Original-From: Chris Swain Content-transfer-encoding: 7BIT Content-type: text/plain; CHARSET=US-ASCII Date: Mon, 14 Mar 2011 13:43:43 +0000 MIME-version: 1.0 Sent to CCL by: Chris Swain [swain|*|mac.com] Hi, You might want to have a look at JKlustor (http://www.chemaxon.com/products/jklustor/) might be useful for the phylogenetic tree like display Cheers Chris On 14 Mar 2011, at 11:18, Andrew Voronkov drugdesign##yandex.ru wrote: > > Sent to CCL by: Andrew Voronkov [drugdesign~!~yandex.ru] > I have a desire to depict process of hit-to lead development and lead optimization in a tree-like manner. But I became curious if there are any tools which may assist to visualize such an evolution - for example I enter the initial hit and then a number of derivatives, then some of these derivatives have other derivatives etc. Something like phylogenetic tree, but with taking into account the chemical similarity. If you are aware of any of such tools or approaches, please give the name of software, or links to some publications or algorithms. Probably there is some special term for this field of chemoinformatics. This is nothing to do with PCA and diversity selection, this is something between data management and workflow description from one side and similarity evaluation from another. > > > Best regards, > Andrew> > From owner-chemistry@ccl.net Mon Mar 14 10:37:01 2011 From: "Kwangho Nam kwanghonam##gmail.com" To: CCL Subject: CCL: Running AM1/d-PhoT with CHARMM/MNDO97 interface Message-Id: <-44130-110314094350-1042-xgckZ2hr9Lhtwmlv9HKTMg^^server.ccl.net> X-Original-From: Kwangho Nam Content-Transfer-Encoding: 7bit Content-Type: text/plain; format=flowed; charset="iso-8859-1"; reply-type=original Date: Mon, 14 Mar 2011 09:43:41 -0400 MIME-Version: 1.0 Sent to CCL by: Kwangho Nam [kwanghonam!=!gmail.com] Dear Krishna, Top value for AM1/d-PhoT is -12. Ignore the output says PM3/d. Best, Kwangho Nam -- ------------------------------------------------------------------ Kwangho Nam, Ph.D. Dept. of Chemistry and Chemical Biology Harvard University 12 Oxford Street Cambridge, MA 02138 ----------------------------------------------------------------- ----- Original Message ----- > From: "Krishna Kuben Govender kk.govender,+,gmail.com" To: "Nam, Kwangho " Sent: Monday, March 14, 2011 06:05 Subject: CCL: Running AM1/d-PhoT with CHARMM/MNDO97 interface > > Sent to CCL by: "Krishna Kuben Govender" [kk.govender*gmail.com] > Good day everyone. > > I am currently making use of CHARMM c35b5 and I would like to run a > simulation with the AM1/d-PhoT Hamiltonian. > Can anyone tell me what the iop value within the MNDO97 input file needs > to be in order to be able to run the above mentioned Hamiltonian? > > I have had a look at the source and discovered that the iop value should > be -12, but when I run the simulation the output file tells me that it is > using the PM3/d Hamiltonian. > > Should anyone have any ideas as to what I an doing incorrectly can you > please let me know. > > Thanks. > > Krishna Kuben Govender > Scientific Computing Research Unit > Department of Chemistry > University of Cape Town> > From owner-chemistry@ccl.net Mon Mar 14 11:50:00 2011 From: "nazanin jamshidi na.jamshidi : gmail.com" To: CCL Subject: CCL: MRCI, MRCC and EOM calculation Message-Id: <-44131-110314013214-19165-hScSqkiBlLHfV91k1KEFzQ ~ server.ccl.net> X-Original-From: nazanin jamshidi Content-Type: multipart/alternative; boundary=000e0cd23f14f3afe5049e6aa10c Date: Mon, 14 Mar 2011 10:02:07 +0430 MIME-Version: 1.0 Sent to CCL by: nazanin jamshidi [na.jamshidi]-[gmail.com] --000e0cd23f14f3afe5049e6aa10c Content-Type: text/plain; charset=ISO-8859-1 Dear All we want to obtain excited state surface of small molecule using multi reference methods such as MRCI and MRCC or other method such as EOM that give us accurate result for small molecule. but we are not access to Molpro and Molcas program. Therefore I want to know is the any programs that do these calculations accurately. Thanks a lot Nazanin --000e0cd23f14f3afe5049e6aa10c Content-Type: text/html; charset=ISO-8859-1 Content-Transfer-Encoding: quoted-printable

Dear All

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">we want to = obtain excited state surface of small molecule using multi reference method= s such as MRCI and MRCC or other method such as EOM that give=A0us accurate= result for small molecule. but we are not access to Molpro and Molcas prog= ram.

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">=A0<= /p>

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">Therefore I= want to know is the any programs that do these calculations accurately.

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">=A0<= /p>

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">Thanks a lo= t

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">=A0<= /p>

<= span style=3D"FONT-FAMILY: 'Times New Roman','serif'; FONT-= SIZE: 12pt; mso-fareast-font-family: 'Times New Roman'">Nazanin


--000e0cd23f14f3afe5049e6aa10c-- From owner-chemistry@ccl.net Mon Mar 14 15:04:00 2011 From: "eurisco1---pochta.ru" To: CCL Subject: CCL: MRCI, MRCC and EOM calculation Message-Id: <-44132-110314141801-29688-g1+awv9xGYHVSQVScouMSA||server.ccl.net> X-Original-From: Content-Type: multipart/alternative; boundary="----=_NextPart_000_0019_01CBE28D.41592B20" Date: Mon, 14 Mar 2011 21:17:42 +0300 MIME-Version: 1.0 Sent to CCL by: [eurisco1 _ pochta.ru] ]rn  qnnayemhe hg meqjnk|jhu w`qrei b tnpl`re MIME. ------=_NextPart_000_0019_01CBE28D.41592B20 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Dear Nazanin Jamshidi, Both MRCI and MRCC are implemented in COLUMBUS and ORCA. EOM-CCSD is implemented in CFOUR and GAMESS-US. MRCI is implemented GAMESS-US. MRCC is implemented in MRCC program. Sincerely, Ol Ga > From: nazanin jamshidi na.jamshidi : gmail.com=20 Sent: Monday, March 14, 2011 8:32 AM To: Ga, Ol =20 Subject: CCL: MRCI, MRCC and EOM calculation Dear All we want to obtain excited state surface of small molecule using multi = reference methods such as MRCI and MRCC or other method such as EOM that = give us accurate result for small molecule. but we are not access to = Molpro and Molcas program.=20 Therefore I want to know is the any programs that do these calculations = accurately. Thanks a lot=20 Nazanin ------=_NextPart_000_0019_01CBE28D.41592B20 Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable
Dear Nazanin Jamshidi,
 
Both MRCI and MRCC are implemented = in COLUMBUS=20 and ORCA.
EOM-CCSD is implemented in CFOUR and = GAMESS-US.
MRCI is implemented = GAMESS-US.
MRCC is implemented in MRCC=20 program.
 
Sincerely,
Ol Ga
 
 
 
Sent: Monday, March 14, 2011 8:32 AM
Subject: CCL: MRCI, MRCC and EOM = calculation
 

Dear=20 All

we=20 want to obtain excited state surface of small molecule using multi = reference=20 methods such as MRCI and MRCC or other method such as EOM that give us = accurate=20 result for small molecule. but we are not access to Molpro and Molcas = program.=20

 

Therefore=20 I want to know is the any programs that do these calculations=20 accurately.

 

Thanks=20 a lot

 

Nazanin


------=_NextPart_000_0019_01CBE28D.41592B20-- From owner-chemistry@ccl.net Mon Mar 14 20:20:00 2011 From: "Konstantinos D Papavasileiou p.kostas77\a/gmail.com" To: CCL Subject: CCL:G: Gaussian09 and NBO analysis problems Message-Id: <-44133-110314201542-4416-DDGKrZwksgNOQaCjLQ6O6w**server.ccl.net> X-Original-From: "Konstantinos D Papavasileiou" Date: Mon, 14 Mar 2011 20:15:40 -0400 Sent to CCL by: "Konstantinos D Papavasileiou" [p.kostas77-,-gmail.com] Dear community, I've been trying to perform an NBO analysis in G09 on an already optimized structure by an ONIOM3 calculation. The route section is the following: oniom(mp2/cc-pvdz:rpbepbe/3-21g/auto:uff) pop=(nbo,savenbos) The calculation ends with the following error message: Storage needed: 1886556 in NPA, 1134355 in NBO ( 50872350 available) Subroutine NAOANL could not find a S-type core orbital on atom O 14. ICORE : 1 0 0 0 M : 1 LA : 1 Error termination via Lnk1e in l607.exe After a search in CCL's database some google-ing, I only came across this error with relation to NMR calculations in previous Gaussian versions. Any ideas on how to overcome this situation? Thank you in advance, Konstantinos D. Papavasileiou | Department of Chemistry | | University of Ioannina | | GR-451 10 Ioannina | | GREECE | From owner-chemistry@ccl.net Mon Mar 14 21:16:00 2011 From: "Jon Wright jon : gate.sinica.edu.tw" To: CCL Subject: CCL:G: Gaussian09 and NBO analysis problems Message-Id: <-44134-110314211415-2233-Mnthp+TvdBmDsvvzrnyGOQ^server.ccl.net> X-Original-From: Jon Wright Content-Transfer-Encoding: 7bit Content-Type: text/plain; charset=ISO-8859-1; format=flowed Date: Tue, 15 Mar 2011 09:13:59 +0800 MIME-Version: 1.0 Sent to CCL by: Jon Wright [jon{}gate.sinica.edu.tw] Dear Konstantinos, Sorry to say but for our calculations we have found the NBO implementation in g09 to be broken for the complexes we study, for us it broke around the g03e1 version, as in the results for the atom charges were wildly different to the previous g03b/c/d cahrges. We emailed Gaussian about this and had a couple of replies saying they would look into it (this was approx 2009). We expected it to be fixed in G09 but discovered it wasn't. We then obtained the NBO 5.9 package separately and compiled it into g09 and everything works again. So my suggestion is to go and purchase the NBO 5.9 package and drop the Gaussian 3.0 (3.1) version. http://www.chem.wisc.edu/~nbo5/nbo59.htm Jon > Sent to CCL by: "Konstantinos D Papavasileiou" [p.kostas77-,-gmail.com] > Dear community, > > I've been trying to perform an NBO analysis in G09 on an already > optimized structure by an ONIOM3 calculation. The route section is the > following: > > oniom(mp2/cc-pvdz:rpbepbe/3-21g/auto:uff) pop=(nbo,savenbos) > > The calculation ends with the following error message: > > Storage needed: 1886556 in NPA, 1134355 in NBO ( 50872350 available) > Subroutine NAOANL could not find a S-type core orbital on atom O 14. > ICORE : 1 0 0 0 M : 1 LA : 1 > Error termination via Lnk1e in l607.exe > > After a search in CCL's database some google-ing, I only came across > this error with relation to NMR calculations in previous Gaussian versions. > Any ideas on how to overcome this situation? > Thank you in advance, > Konstantinos D. Papavasileiou