From owner-chemistry@ccl.net Mon Mar 10 10:22:00 2014 From: "RICHARD WOOD rwoodphd_+_msn.com" To: CCL Subject: CCL: Membrane building tools Message-Id: <-49826-140310102121-2405-l/GvznfEo2jKzjpeqd4OjQ[a]server.ccl.net> X-Original-From: RICHARD WOOD Content-Type: multipart/alternative; boundary="_57ba4d0d-d003-4815-9ec1-62138793c6ef_" Date: Mon, 10 Mar 2014 09:21:12 -0500 MIME-Version: 1.0 Sent to CCL by: RICHARD WOOD [rwoodphd. * .msn.com] --_57ba4d0d-d003-4815-9ec1-62138793c6ef_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Does anybody know of a reliable tool to build a cell membrane that is large= r than say 100 by 100 lipids per leaf? I've tried the CHARMM gui and CELLm= icrocosmos MembraneEditor=2C but neither work for my purpose. I can build = something that has 300 or 400 lipids per leaf=2C but I'd like something lar= ger than that (if possible). Who knows=2C something as big as I want may n= ot have been done before. TIA=2CRichard = --_57ba4d0d-d003-4815-9ec1-62138793c6ef_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

Does anybody know of a reliable = tool to build a cell membrane that is larger than say 100 by 100 lipids per= leaf? =3BI've tried the CHARMM gui and CELLmicrocosmos MembraneEditor= =2C but neither work for my purpose. =3BI can build something that has= 300 or 400 lipids per leaf=2C but I'd like something larger than that (if = possible). =3BWho knows=2C something as big as I want may not have bee= n done before.

TIA=2C

Richard

= --_57ba4d0d-d003-4815-9ec1-62138793c6ef_-- From owner-chemistry@ccl.net Mon Mar 10 12:41:01 2014 From: "Felipe Pineda pideca,hotmail.com" To: CCL Subject: CCL: Membrane building tools Message-Id: <-49827-140310123927-6019-lkE9mI/28xI3dXSIdMI8nw{}server.ccl.net> X-Original-From: Felipe Pineda Content-Type: multipart/alternative; boundary="_838e289d-0519-4221-a7ec-58e98246faf9_" Date: Mon, 10 Mar 2014 17:39:18 +0100 MIME-Version: 1.0 Sent to CCL by: Felipe Pineda [pideca---hotmail.com] --_838e289d-0519-4221-a7ec-58e98246faf9_ Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Have you also tried packmol (http://www.ime.unicamp.br/~martinez/packmol/)? Good luck! Felipe > From: owner-chemistry- -ccl.net To: fpineda- -uni-bonn.de Subject: CCL: Membrane building tools Date: Mon=2C 10 Mar 2014 09:21:12 -0500 =0A= =0A= =0A= Does anybody know of a reliable tool to build a cell membrane that is large= r than say 100 by 100 lipids per leaf? I've tried the CHARMM gui and CELLm= icrocosmos MembraneEditor=2C but neither work for my purpose. I can build = something that has 300 or 400 lipids per leaf=2C but I'd like something lar= ger than that (if possible). Who knows=2C something as big as I want may n= ot have been done before. TIA=2CRichard = --_838e289d-0519-4221-a7ec-58e98246faf9_ Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable

= Have you also tried packmol (http://www.ime.unicamp.br/~martinez/packmol/)?=

Good luck!

Felipe

From: owner-chemistry- -ccl.net
To: fpineda- -uni-bonn= .de
Subject: CCL: Membrane building tools
Date: Mon=2C 10 Mar 2014 09= :21:12 -0500

=0A= =0A= =0A=

Does anybody know of a reliable tool to build a cell membr= ane that is larger than say 100 by 100 lipids per leaf? =3BI've tried = the CHARMM gui and CELLmicrocosmos MembraneEditor=2C but neither work for m= y purpose. =3BI can build something that has 300 or 400 lipids per lea= f=2C but I'd like something larger than that (if possible). =3BWho kno= ws=2C something as big as I want may not have been done before.

TIA=2C

Richard

= --_838e289d-0519-4221-a7ec-58e98246faf9_--