From owner-chemistry@ccl.net Sun Sep 24 04:49:00 2006 From: "Martijn Zwijnenburg martijn::ri.ac.uk" To: CCL Subject: CCL: Silica (alpha quartz) configuration Message-Id: <-32607-060923185728-9766-ViCaxYXM4LFX82dyMxm6RA ~~ server.ccl.net> X-Original-From: "Martijn Zwijnenburg" Content-Type: multipart/alternative; boundary="----=_NextPart_000_0060_01C6DF66.09973300" Date: Sat, 23 Sep 2006 23:14:36 +0100 MIME-Version: 1.0 Sent to CCL by: "Martijn Zwijnenburg" [martijn*|*ri.ac.uk] This is a multi-part message in MIME format. ------=_NextPart_000_0060_01C6DF66.09973300 Content-Type: text/plain; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable Hi, I'm not exactly sure what you're looking for but the website of the = structure commission of the international zeolite association = (http://www.iza-structure.org/) has structural data for some of the = dense and all of the porous frameworks which have been experimentally = prepared in a siliceous or strongly related (aluminosilicates, = aluminophosphates, GeO2 etc. etc.) chemical compositions (see: = http://topaz.ethz.ch/IZA-SC/XRDpatterns.htm). In the latter case you = obviously have to change Al, P etc. etc. to Si and remove any cations. On the website http://www.hypotheticalzeolites.net/ you will find a = large database of hypothetical silica frameworks, i.e. tetrahedral TX2 = frameworks that haven't been found as yet in experimentally prepared = materials. Also on this page links to other such databases. Hope this helps. Martijn Zwijnenburg ----- Original Message -----=20 >> From: "Parveen Sachdeva pksiit]![gmail.com" = > Reply-To: "CCL Subscribers" > Date: Thu, 21 Sep 2006 21:52:53 -0400 >=20 >>Sent to CCL by: "Parveen Sachdeva" [pksiit+*+gmail.com] >>Hi Everybody, >> >>I want to generate various configurations of SiO2 (alpha quartz) for = molecular dynamics study. I was trying to find some literature online = but did not manage much. If anyone can help me suggest some method of = generating lattice structures or some software that does that it would = be great help.=20 >> >>I want to generates coordinates of SiO2 as nx,ny,nz number of unit = cells in each direction. I hope I'm able to explain what I am trying to = do here. >> >>thanks for the help in advance. >>Parveen> >> >> >> >=20 >=20 >=20 >=20 >=20 > ________________________________________________________________ > Sent via the WebMail system at mail2.wlsc.edu >=20 >=20 >=20 > -=3D This is automatically added to each message by the mailing script = =3D- > To recover the email address of the author of the message, please = change>=20>=20>=20 > Subscribe/Unsubscribe:=20>=20>=20 > Job: http://www.ccl.net/jobs=20 > Conferences: = http://server.ccl.net/chemistry/announcements/conferences/ >=20 > Search Messages: http://www.ccl.net/htdig (login: ccl, Password: = search) >=20>=20>=20 > =>=20 >=20 > ------=_NextPart_000_0060_01C6DF66.09973300 Content-Type: text/html; charset="iso-8859-1" Content-Transfer-Encoding: quoted-printable
Hi,
 
I'm not exactly sure = what you're=20 looking for but the website of the structure commission of the = international=20 zeolite association (http://www.iza-structure.org/)= =20 has structural data for some of the dense and all of the porous = frameworks=20 which have been experimentally prepared in a siliceous or strongly = related=20 (aluminosilicates, aluminophosphates, GeO2 etc. etc.) chemical = compositions=20 (see: http://topaz.ethz.ch= /IZA-SC/XRDpatterns.htm).=20 In the latter case you obviously have to change Al, P etc. etc. to Si = and remove=20 any cations.
 
On the website http://www.hypotheticalzeol= ites.net/ you=20 will find a large database of hypothetical silica frameworks, i.e.=20 tetrahedral TX2 frameworks that haven't been found as yet in = experimentally=20 prepared materials.  Also on this page links to other such=20 databases.
 
Hope this = helps.
 
Martijn = Zwijnenburg
 
----- Original Message ----- =
>> From: "Parveen Sachdeva=20 pksiit]![gmail.com" <owner-chemistry|-|ccl.net>
> Reply-To: = "CCL=20 Subscribers" <chemistry|-|ccl.net>
> Date:  Thu, 21 Sep = 2006=20 21:52:53 -0400
>
>>Sent to CCL by: "Parveen  = Sachdeva"=20 [pksiit+*+gmail.com]
>>Hi Everybody,
>>
>>I = want to=20 generate various configurations of SiO2 (alpha quartz) for molecular = dynamics=20 study. I was trying to find some literature online but did not manage = much. If=20 anyone can help me suggest some method of generating lattice structures = or some=20 software that does that it would be great help. =
>>
>>I want=20 to generates coordinates of SiO2 as nx,ny,nz number of unit cells in = each=20 direction. I hope I'm able to explain what I am trying to do=20 here.
>>
>>thanks for the help in=20 advance.
>>Parveen>
>>
>>
>>
&g= t; 
>=20
>
>
>
>=20 ________________________________________________________________
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------=_NextPart_000_0060_01C6DF66.09973300-- From owner-chemistry@ccl.net Sun Sep 24 05:59:00 2006 From: "Brian Salter-Duke b_duke*bigpond.net.au" To: CCL Subject: CCL: Queue Systems for Linux PC Cluster Message-Id: <-32609-060923145536-22711-itSRKv7pqo9GdqlhdUFvjQ * server.ccl.net> X-Original-From: Brian Salter-Duke Content-Disposition: inline Content-Type: text/plain; charset=us-ascii Date: Sat, 23 Sep 2006 18:44:43 +0100 Mime-Version: 1.0 Sent to CCL by: Brian Salter-Duke [b_duke.(_).bigpond.net.au] On Sat, Sep 23, 2006 at 01:12:40PM -0400, Sidney Ramos Santana santanasidney _ yahoo.com.br wrote: > Sent to CCL by: "Sidney Ramos Santana" [santanasidney=yahoo.com.br] > Dear CCL Users, > > I would like to install a "Queue System" for an automatic > > control of "jobs" submission by programs as DLPOLY, > > NWCHEM, DALTON, COLUMBUS on a Linux PC Cluster. > > I would appreciate to know your opinions about > > this subject. > > So, what is the best Queue Systems for a Linux PC Cluster? I use my own - the Simple Queueing System:- http://sqs.sourceforge.net/ but then "I would, would'nt I". Seriously it is not that good, but I would welcome comment. I plan to release a new version in October that simplifies use on a cluster, but I am in UK at present and it will have to wait until I get home on Oct 7th. It also depends on the number of users and number of jobs. Some systems are over kill. Cheers, Brian. > Thanks for any help! > > Best Regard, > > Sidney Ramos de Santana > Theoretical and Computational Chemistry Lab. (LQTC) > Fundamental Chemistry Depart. (DQF) > Federal University of Pernambuco (UFPE) > Recife - PE - Brazil > e-mail: santanasidney_at_yahoo.com.br> > > -- Brian Salter-Duke (Brian Duke) b_duke(_)bigbond.net.au - NB New! Old still works Post: 626 Melbourne Rd, Spotswood, VIC, 3015, Australia Phone 03-93992847. http://www.salter-duke.bigpondhosting.com/brian/index.htm Honorary Researcher Fellow, Dept. of Medicinal Chemistry, Monash Univ. From owner-chemistry@ccl.net Sun Sep 24 05:24:00 2006 From: "Agalya G agalya81,+,gmail.com" To: CCL Subject: CCL:G: HOMO-LUMO energy gap for cation radical Message-Id: <-32608-060924044708-16463-EvZ/aqpOoALQN28+Al3zNg . server.ccl.net> X-Original-From: "Agalya G" Date: Sun, 24 Sep 2006 04:47:07 -0400 Sent to CCL by: "Agalya G" [agalya81#%#gmail.com] Dear CCL users, In my previous message i made typing mistakes. Kindly answer for this question. I have a querry regarding HOMO-LUMO gap for cation radical system. I have performed calculations for neutral, cation radical and dication systems. 1) For neutral system, I used ( Charge=0 and spin multiplicity=1) 2) For cation radical system, I used ( Charge=+1 and spin multiplicity=2) 3) For dication, I used (charge=+2 and spin multiplicity=1) For neutal and dication systems, in gaussian03 program, it gives Occupied and Virtual orbital energies with alpha spin. For cation radical system, it gives occupied and unoccupied orbital energies for both alpha and beta spins. My querry is, how to compare HOMO-LUMO energy gaps between these systems. How to get HOMO-LUMO gap for cation radical system, in case i want to compare this value with HOMO-LUMO energy gap with neutral and dication systems. Kindly give me some suggestions. With Regards, Agalya