From owner-chemistry@ccl.net Fri Oct 7 03:23:01 2005 From: "Michel Petitjean ptitjean]=[itodys.jussieu.fr" To: CCL Subject: CCL: Re: W:Protein Superposition Software Message-Id: <-29518-051007031326-19712-zKZ2nq2dlxFPPPP6KIA1rQ||server.ccl.net> X-Original-From: Michel Petitjean Date: Fri, 7 Oct 2005 09:13:14 +0200 (MEST) Sent to CCL by: Michel Petitjean [ptitjean{}itodys.jussieu.fr] To: chemistry[]ccl.net Subject: CCL: Re: W:Protein Superposition Software > I have the N,CA,C atom coordinate file in the PDB format of two > proteins.Which software will allow the superposition of these proteins > (without the sidechains)? Eliminate the side chains records from the file, then call the freeware ARMS or CSR: http://petitjeanmichel.free.fr/itoweb.petitjean.freeware.html#ARMS http://petitjeanmichel.free.fr/itoweb.petitjean.freeware.html#CSR ARMS runs faster than CSR, but needs a known pairwise correspondence (e.g. the first residue of protein 1 is to be matched with the first residue of protein 2, and so on...). Michel Petitjean, Email: petitjean[]itodys.jussieu.fr ITODYS (CNRS, UMR 7086) ptitjean[]ccr.jussieu.fr 1 rue Guy de la Brosse Phone: +33 (0)1 44 27 48 57 75005 Paris, France. FAX : +33 (0)1 44 27 68 14 http://petitjeanmichel.free.fr/itoweb.petitjean.html From owner-chemistry@ccl.net Fri Oct 7 10:16:01 2005 From: "Sergio Emanuel Galembeck segalemb/./usp.br" To: CCL Subject: CCL: W:multilevel compilation Message-Id: <-29519-051007101258-31829-aDxnxl3b7JrQXOPiDPyawA!=!server.ccl.net> X-Original-From: "Sergio Emanuel Galembeck" Sent to CCL by: "Sergio Emanuel Galembeck" [segalemb|,|usp.br] Hello, Has anyone suceed to compile MULTILEVEL software with gfortran40? The OS is FreeBSD5.4. Thanks, Sergio